This course covers the analysis and visualization of scientific data. Topics will include data management, basic statistical analysis, data mining techniques, and the fundamental concepts of machine learning. Students will also learn how to visualize data using 2-D and 3-D graphics, focusing on techniques that highlight patterns and relationships. Course projects will use data from active research projects at Colby.
|Date Time, Location||
|Lecture Instructor (A)||Stephanie Taylor
Office: Davis 114 Email: firstname.lastname@example.org
M 12:00pm - 2:30pm
T 2:00pm - 4:00pm
W 12:30pm - 2:30pm
R 12:30pm - 2:30pm
F 11:00am - 12:00pm
Stephanie will send an email at the beginning of each week with any changes.
|Lecture Instructor (B)||Oliver W. Layton
Office: Davis 115 Email: email@example.com
|M 11:00am - 12:00pm
W 2:30pm - 5:00pm
R 12:30pm - 2:00pm
F 12:00pm - 2:00pm
If my door is open, please come in!
|Lecture Instructor (C)
Lab Instructor (C/D)
|Bruce A. Maxwell
Office: Davis 112 Email: firstname.lastname@example.org
M 1:00pm - 3:00pm, 9:30pm - 11:30pm
R 7:30pm - 11:00pm
|Lab Instructor (A/B)||Zadia Codabux
Office: Davis 111 Email: email@example.com
|M 2pm - 4pm
T 11am – 12pm, 4 – 5pm
W 2pm - 3pm
Others by appointment.
Location: Davis 102
|Weekly Programming Projects||
|Class Participation||You are expected to attend every class. The course will involve both lectures and hands-on activities in lab. For this course to be truly successful, your presence and participation in lecture and lab is important. When you have a question, ask it. It is highly probable that one of your classmates has the same question. When we give you an opportunity to share your opinion or your answer, please speak up. We want to hear what you have to say. Discussion is a vital part of the learning experience. Good class discussion needs your contribution. If you must miss a class, you are responsible for making up the material covered in that lecture.|
In this course there will be regular opportunities for you to practice what you have learned and to demonstrate your accomplishments. Below, is a short description of each opportunity, along with the percentage of your final course grade it represents.
The course grade will be determined as follows:
|How to succeed||
Labs and Projects: Come to lab ready to focus on the new project. Ask the lab instructor and TA for help if you need it. Talk to your peers about the course concepts.
The grading policy on projects is that the tasks specified explicitly in the lab and project descriptions will constitute about 87% of the assignment. If you complete the specified parts of the assignment properly, and produce a high-quality writeup, it's worth up to a B+ grade. In addition, the written instructions will include a variety of extensions to the assignment, or you can come up with your own. Completing one or more extensions, in addition to the specified parts of the assignment, will earn you some flavor of A. Extensions are not required.
Once during the semester, except for Projects 5 or 9, you may take a 4-day freebee extension,
handing it in on Sunday instead of Wednesday.
Quizzes: Study for the quizzes by doing the homeworks. We will drop the lowest two quiz grades. If you make a silly mistake one week, it won't affect your grade.
Short homeworks: Try them. You will receive full credit as long as you make an honest attempt to complete every question. Please ask or email questions to the professor if something isn't clear (see 30-Minute Rule below).
Participation: Speak up in class. Come to office hours. Ask your your instructor or TA for help.
Final Exam: The final exam will be similar to a large set of quizzes (but written from a more wholistic perspective). The best way to study for the final exam is to retake all of the old quizzes (and quizzes from old semesters). Also, read through your notes and make sure you understand everything in them.
For more information about expectations and the assignment of grades, see this document.
|Help and Discussion Outside of Lecture||
We will use the Python computer language (v3.7) as the basis for the course, with weekly lab sessions to provide hands-on, supervised learning. You will be using a text editor of your choice (e.g. Visual Studio Code, BBEdit) to write code. Some projects may also use other free software that you can install on your computer (e.g. Numpy and Scipy). The computers in Davis 101 and 102 are equipped with all necessary software and you can access the building and the labs 24/7 during the semester.
It should go without saying that you should back up any files related to this course.
If the code you submit to us is somehow lost (through your fault or our fault),
we must be able to get another copy from you. We suggest you use the college's
personal server (
The following textbook is recommended as an additional resource, but is not required.
Witten, Frank, and Hall, Data Mining: Practical Machine Learning Tools and Techniques , Morgan Kaufmann, 2011, 3rd Ed.
|Collaboration, Academic honesty||
Computer science, both academically and professionally, is a collaborative discipline. In any collaboration, however, all parties are expected to make their own contributions and to generously credit the contributions of others. In our class, therefore, collaboration on homework and programming assignments is encouraged, but you as an individual are responsible for understanding all the material in the assignment and doing your own work. Always strive to do your best, give generous credit to others, start early, and seek help early from both your professors and classmates.
The following rules are intended to help you get the most out of your education and to clarify the line between honest and dishonest work. We reserve the right to ask you to verbally explain the reasoning behind any answer or code that you turn in and to modify your project grade based on your answers. It is vitally important that you turn in work that is your own. We do use automated plagiarism detection software, so please be sure to abide by these, rather minimal, rules. Reports of academic dishonesty are handled by an academic review board and a finding of academic dishonesty may result in significant sanctions. For more details on Colby's Academic Integrity policies and procedures, see colby.edu/academicintegrity.
|The Colby Affirmation||
Colby College is a community dedicated to learning and committed to the growth and well-being of all its members.
As a community devoted to intellectual growth, we value academic integrity. We agree to take ownership of our academic work, to submit only work that is our own, to fully acknowledge the research and ideas of others in our work, and to abide by the instructions and regulations governing academic work established by the faculty.
As a community built on respect for ourselves, each other, and our physical environment, we recognize the diversity of people that have gathered here and that genuine inclusivity requires active, honest, and compassionate engagement with one another. We agree to respect each other, to honor community expectations, and to comply with college policies.
As a member of this community, I pledge to hold myself and others accountable to these values.
What does this mean to students?
|Title IX Statement||
Colby College prohibits and will not tolerate sexual misconduct or gender-based discrimination of any kind. Colby is legally obligated to investigate sexual misconduct (including, but not limited to sexual assault and sexual harassment).
If you wish to speak confidentially about an incident of sexual misconduct, please contact Colby Counseling Services (207-859-4490) or the Director of the Gender and Sexual Diversity Program, Emily Schusterbauer (207-859-4093).
Students should be aware that faculty members are considered responsible employees; as such, if you disclose an incident of sexual misconduct to a faculty member, they have an obligation to report it to Colby's Title IX Coordinator. "Disclosure" may include communication in-person, via email/phone/text, or through class assignments.
To learn more about sexual misconduct or report an incident, visit http://www.colby.edu/sexualviolence/.
We are available to discuss academic accommodations that any student with a documented disability may require. Please note that you’ll need to provide a letter from the Dean of Studies Office documenting your approved accommodations. Please meet with us within two weeks of the start of the semester to make a request for accommodations so that we can work together with the College to make the appropriate arrangements for you. Kate McLaughlin, Associate Director of Access and Disability Services is the primary contact for accommodations and any questions related to educational testing and documentation.
Mental health. We care about our students' well-being and understand that they may face mental health challenges. Students are encouraged to seek support from the College's available resources, including your advising dean and Counseling Services. (For immediate care, please call 207-859-4490 and press "0" to reach the on-call counselor). We are willing to discuss reasonable accommodations during a crisis, but to fulfill our educational mission, students are expected to adhere to the attendance policy. Failure to do so because of mental health challenges may require consultation with the Dean of Studies Office.
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